flat-tree implementation coming down the tubes
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*.pyc
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.tox/
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__pycache__
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build/
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dist/
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pip-wheel-metadata/
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documentation/build/
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version: 2
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build:
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image: latest
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sphinx:
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configuration: documentation/source/conf.py
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fail_on_warning: true
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python:
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version: 3.7
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install:
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- method: pip
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path: .
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extra_requirements:
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- docs
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7
CHANGELOG.rst
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CHANGELOG.rst
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Flat_Tree 0.0.1a2 (2019-07-01)
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==============================
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Project Announcements
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---------------------
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- Initial development release is made! (#1)
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CODE_OF_CONDUCT.rst
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CODE_OF_CONDUCT.rst
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Introduction
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||||||
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------------
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||||||
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||||||
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The DatPy community is committed to providing an inclusive, safe, and
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collaborative environment for all participants, regardless of their gender,
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gender expression, race, ethnicity, religion, sexual orientation, sexual
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characteristics, physical appearance, disability, or age. We encourage every
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participant to be themselves, and must respect the rights of others. The code
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of conduct is a set of guidelines that establishes shared values and ensures
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that behaviors that may harm participants are avoided.
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The values of the DatPy community are focused on developing both our individual
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and collective potential, supporting and empowering the most marginalized,
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mutual respect, and an anti-violence approach that favors support and
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collaboration among participants and the resolution of conflicts. A code of
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conduct helps us co-exist in a more positive way and provides individuals who
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are victims of negative behaviors with confidence that they will be supported
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by the organization and the DatPy community, who respects and stands behind the
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code of conduct.
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The DatPy community works towards providing a welcoming environment where
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|
participants are treated with dignity and respect and are free to be
|
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themselves. We encourage all participants to approach the Librehosters network
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with an open and positive attitude, engaging constructively with others at all
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times.
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Respect for Diversity & Inclusion
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---------------------------------
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We avoid comments, actions or propaganda that encourage discrimination related
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to gender, gender expression, race, ethnicity, religion, sexual orientation,
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sexual characteristics, physical appearance, disability, or age.
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Respect Freedom of Expression
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|
-----------------------------
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We support an individual's freedom of expression, and will not make fun of
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|
accents or make unsolicited grammatical corrections. We will strive to better
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||||||
|
understand each other by not assuming experiences or beliefs, clarifying
|
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|
meanings, and making an effort to speak clearly, avoiding jargon and acronyms.
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|
||||||
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Commitment to Non-Violence
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||||||
|
--------------------------
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||||||
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We will not engage in any type of violence or aggression, including verbal
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threats or complaints, intimidation, stalking or harassment, whether physically
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or psychologically.
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Rejection of Sexual Harassment
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|
------------------------------
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We understand sexual harassment as unwanted physical contact or insinuation of
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|
a sexual nature, as well as displaying images, drawings or visual
|
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|
representations of any kind that objectify members of any gender or reinforce
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oppression. The only exception is if this is part of a session, workshop and/or
|
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|
educational experience where showing these images is educational in nature.
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Respect for Privacy
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||||||
|
-------------------
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We safeguard the privacy of the participants. This includes refraining from
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|
posting or publishing information about attendees (including names and
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|
affiliation) unless given clear permission, and avoid any type of unauthorized
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video, audio recording, or photography.
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Facilitate Participation & Collaboration
|
||||||
|
----------------------------------------
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We work to create an environment that facilitates participation for all
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|
participants. We will not engage in sustained disruption of discussions or
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|
events, interrupt conversations in a way that negatively impacts collaboration,
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or engage in toxic behaviours to attract negative attention to a participant.
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We Care about the Integrity and Health of the Community
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||||||
|
-------------------------------------------------------
|
||||||
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We value the health of the community and will not engage in behaviour that can
|
||||||
|
negatively impact it. This includes contaminating food or drink with drugs, or
|
||||||
|
inciting or insisting on the consumption of alcohol, psychoactive substances,
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||||||
|
etc.
|
||||||
|
|
||||||
|
Support Positive Interactions Among Participants
|
||||||
|
------------------------------------------------
|
||||||
|
|
||||||
|
We are committed to engaging constructively with others at all times. We will
|
||||||
|
not tolerate bullying, including requesting or mobilizing others, either in
|
||||||
|
person or online, to bully others.
|
||||||
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Enforcement
|
||||||
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-----------
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||||||
|
|
||||||
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Overseeing the code of conduct
|
||||||
|
==============================
|
||||||
|
|
||||||
|
The DatPy community, composed of volunteers, oversees the code of conduct,
|
||||||
|
including addressing all incident reports. Breaking the code of conduct may
|
||||||
|
result in immediate expulsion from the Librehosters network.
|
||||||
|
|
||||||
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How to Report an Incident
|
||||||
|
=========================
|
||||||
|
|
||||||
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If you witness an incident or are the victim of one:
|
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|
||||||
|
1. You can reach out directly via email at ``lukewm [at] riseup.net``.
|
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|
|
||||||
|
Acknowledgements
|
||||||
|
----------------
|
||||||
|
|
||||||
|
This code of conduct is inspired by the [IFF CoC].
|
||||||
|
|
||||||
|
[IFF CoC]: https://www.internetfreedomfestival.org/wiki/index.php/Code_of_Conduct
|
67
CONTRIBUTING.rst
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CONTRIBUTING.rst
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Get started
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||||||
|
-----------
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||||||
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||||||
|
Install `Tox`_ with:
|
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.. _tox: http://tox.readthedocs.io/
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|
|
||||||
|
.. code-block:: bash
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|
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||||||
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$ pip install --user tox
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Run tests
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||||||
|
---------
|
||||||
|
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||||||
|
.. code-block:: bash
|
||||||
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||||||
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tox -e test
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Lint source
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-----------
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||||||
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||||||
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.. code-block:: bash
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tox -e lint
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Format source
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||||||
|
-------------
|
||||||
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||||||
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.. code-block:: bash
|
||||||
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||||||
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tox -e format
|
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||||||
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Type check source
|
||||||
|
-----------------
|
||||||
|
|
||||||
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.. code-block:: bash
|
||||||
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|
||||||
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tox -e type
|
||||||
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|
||||||
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Release Process
|
||||||
|
---------------
|
||||||
|
|
||||||
|
Add a change entry and re-generate the changelog:
|
||||||
|
|
||||||
|
.. code-block:: bash
|
||||||
|
|
||||||
|
$ towncrier
|
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Make a new release tag:
|
||||||
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|
||||||
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.. code-block:: bash
|
||||||
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|
||||||
|
$ git tag x.x.x
|
||||||
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$ git push --tags
|
||||||
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|
||||||
|
If you have a development install locally, you can verify:
|
||||||
|
|
||||||
|
.. code-block:: bash
|
||||||
|
|
||||||
|
$ flat_tree --version
|
||||||
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|
||||||
|
Then run the release process:
|
||||||
|
|
||||||
|
.. code-block:: bash
|
||||||
|
|
||||||
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$ tox -e metadata-release
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||||||
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$ tox -e release
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LICENSE
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LICENSE
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The MIT License (MIT)
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||||||
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||||||
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Copyright (c) 2019 Luke Murphy
|
||||||
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|
||||||
|
Permission is hereby granted, free of charge, to any person obtaining a copy
|
||||||
|
of this software and associated documentation files (the "Software"), to deal
|
||||||
|
in the Software without restriction, including without limitation the rights
|
||||||
|
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
||||||
|
copies of the Software, and to permit persons to whom the Software is
|
||||||
|
furnished to do so, subject to the following conditions:
|
||||||
|
|
||||||
|
The above copyright notice and this permission notice shall be included in
|
||||||
|
all copies or substantial portions of the Software.
|
||||||
|
|
||||||
|
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
||||||
|
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
||||||
|
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
||||||
|
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
||||||
|
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
||||||
|
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
|
||||||
|
THE SOFTWARE.
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1
MANIFEST.in
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MANIFEST.in
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include LICENSE README.rst CHANGELOG.rst
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README.rst
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.. _header:
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||||||
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||||||
|
*********
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||||||
|
flat_tree
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||||||
|
*********
|
||||||
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|
||||||
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.. image:: https://img.shields.io/badge/license-MIT-brightgreen.svg
|
||||||
|
:target: LICENSE
|
||||||
|
:alt: Repository license
|
||||||
|
|
||||||
|
.. image:: https://badge.fury.io/py/flat_tree.svg
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|
:target: https://badge.fury.io/py/flat_tree
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|
:alt: PyPI Package
|
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.. image:: https://readthedocs.org/projects/flat-tree/badge/?version=latest
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:target: https://flat-tree.readthedocs.io/en/latest/?badge=latest
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:alt: Documentation Status
|
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.. image:: https://img.shields.io/badge/support-maintainers-brightgreen.svg
|
||||||
|
:target: https://decentral1.se/
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:alt: Support badge
|
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.. _introduction:
|
||||||
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|
||||||
|
Utilities for navigating flat trees
|
||||||
|
-----------------------------------
|
||||||
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|
||||||
|
From `The Dat Protocol`_:
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||||||
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.. _The Dat Protocol: https://datprotocol.github.io/book/ch01-01-flat-tree.html
|
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||||||
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Flat Trees are the core data structure that power Dat's Hypercore feeds. They
|
||||||
|
allow us to deterministically represent a tree structure as a vector. This is
|
||||||
|
particularly useful because vectors map elegantly to disk and memory.
|
||||||
|
|
||||||
|
Because Flat Trees are deterministic and pre-computed, there is no overhead
|
||||||
|
to using them. In effect this means that Flat Trees are a specific way of
|
||||||
|
indexing into a vector more than they are their own data structure. This makes
|
||||||
|
them uniquely efficient and convenient to implement in a wide range of
|
||||||
|
languages.
|
||||||
|
|
||||||
|
.. _documentation:
|
||||||
|
|
||||||
|
Documentation
|
||||||
|
*************
|
||||||
|
|
||||||
|
* https://flat_tree.readthedocs.io
|
||||||
|
|
||||||
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.. _mirroring:
|
||||||
|
|
||||||
|
Mirroring
|
||||||
|
*********
|
||||||
|
|
||||||
|
* https://hack.decentral1.se/datpy/flat_tree (primary)
|
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|
* https://github.com/datpy/flat_tree
|
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SPHINXOPTS =
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SPHINXBUILD = sphinx-build
|
||||||
|
SOURCEDIR = source
|
||||||
|
BUILDDIR = build
|
||||||
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|
||||||
|
help:
|
||||||
|
@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
|
||||||
|
|
||||||
|
.PHONY: help Makefile
|
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|
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|
%: Makefile
|
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@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
|
0
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documentation/source/_static/.git-dont-delete
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documentation/source/_templates/.git-dont-delete
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documentation/source/_templates/.git-dont-delete
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*********
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||||||
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Changelog
|
||||||
|
*********
|
||||||
|
|
||||||
|
.. include:: ../../CHANGELOG.rst
|
6
documentation/source/code-of-conduct.rst
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.. _code-of-conduct:
|
||||||
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||||||
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Code of Conduct
|
||||||
|
***************
|
||||||
|
|
||||||
|
.. include:: ../../CODE_OF_CONDUCT.rst
|
8
documentation/source/conf.py
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author = 'decentral1se'
|
||||||
|
copyright = '2019, decentral1se'
|
||||||
|
html_static_path = ['_static']
|
||||||
|
html_theme = 'alabaster'
|
||||||
|
master_doc = 'index'
|
||||||
|
project = 'flat_tree'
|
||||||
|
templates_path = ['_templates']
|
||||||
|
extensions = ['sphinx.ext.autodoc', 'sphinx_autodoc_typehints']
|
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**********
|
||||||
|
Contribute
|
||||||
|
**********
|
||||||
|
|
||||||
|
.. include:: ../../CONTRIBUTING.rst
|
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documentation/source/index.rst
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|||||||
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.. include:: ../../README.rst
|
||||||
|
:end-before: _documentation
|
||||||
|
|
||||||
|
Table of Contents
|
||||||
|
*****************
|
||||||
|
|
||||||
|
.. toctree::
|
||||||
|
|
||||||
|
install
|
||||||
|
modules-api
|
||||||
|
other-impls
|
||||||
|
contribute
|
||||||
|
changelog
|
||||||
|
code-of-conduct
|
11
documentation/source/install.rst
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|
|||||||
|
*******
|
||||||
|
Install
|
||||||
|
*******
|
||||||
|
|
||||||
|
.. code-block:: bash
|
||||||
|
|
||||||
|
$ pip install flat_tree
|
||||||
|
|
||||||
|
.. note::
|
||||||
|
|
||||||
|
Only Python >= 3.6 is supported.
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9
documentation/source/modules-api.rst
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|
|||||||
|
***********
|
||||||
|
Modules API
|
||||||
|
***********
|
||||||
|
|
||||||
|
.. automodule:: flat_tree.accessor
|
||||||
|
:members:
|
||||||
|
|
||||||
|
.. automodule:: flat_tree.iterator
|
||||||
|
:members:
|
9
documentation/source/other-impls.rst
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|
|||||||
|
.. _other-implementations:
|
||||||
|
|
||||||
|
Other Implementations
|
||||||
|
*********************
|
||||||
|
|
||||||
|
* https://github.com/mafintosh/flat-tree
|
||||||
|
* https://github.com/datrs/flat-tree
|
||||||
|
* https://github.com/bcomnes/flattree
|
||||||
|
* https://github.com/datcxx/flat-tree
|
15
flat_tree/__init__.py
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15
flat_tree/__init__.py
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|
|||||||
|
"""Flat tree module."""
|
||||||
|
|
||||||
|
from flat_tree.accessor import FlatTreeAccessor # noqa
|
||||||
|
from flat_tree.iterator import FlatTreeIterator # noqa
|
||||||
|
|
||||||
|
try:
|
||||||
|
import pkg_resources
|
||||||
|
except ImportError:
|
||||||
|
pass
|
||||||
|
|
||||||
|
|
||||||
|
try:
|
||||||
|
__version__ = pkg_resources.get_distribution('flat_tree').version
|
||||||
|
except Exception:
|
||||||
|
__version__ = 'unknown'
|
205
flat_tree/accessor.py
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205
flat_tree/accessor.py
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|
|||||||
|
"""An accessor for navigating flat trees."""
|
||||||
|
|
||||||
|
__all__ = ['FlatTreeAccessor']
|
||||||
|
|
||||||
|
from typing import List, Optional
|
||||||
|
|
||||||
|
|
||||||
|
class FlatTreeAccessor:
|
||||||
|
"""A flat tree accessor."""
|
||||||
|
|
||||||
|
def index(self, depth: int, offset: int) -> int:
|
||||||
|
"""The tree index specified by the depth and offset.
|
||||||
|
|
||||||
|
:param depth: The depth of the tree
|
||||||
|
:param offset: The offset from left hand side of the tree
|
||||||
|
"""
|
||||||
|
return ((1 + (2 * offset)) * (2 ** depth)) - 1
|
||||||
|
|
||||||
|
def offset(self, index: int, depth: Optional[int] = None) -> int:
|
||||||
|
"""The offset of given index from the left hand side of the tree.
|
||||||
|
|
||||||
|
:param index: The tree index
|
||||||
|
:param depth: The depth of the tree
|
||||||
|
"""
|
||||||
|
if not (index & 1):
|
||||||
|
return int(index / 2)
|
||||||
|
|
||||||
|
if depth is None:
|
||||||
|
depth = self.depth(index)
|
||||||
|
|
||||||
|
return int((((index + 1) / (2 ** depth)) - 1) / 2)
|
||||||
|
|
||||||
|
def depth(self, index: int) -> int:
|
||||||
|
"""The depth of the given index in the tree.
|
||||||
|
|
||||||
|
:param index: The tree index
|
||||||
|
"""
|
||||||
|
depth = 0
|
||||||
|
|
||||||
|
index += 1
|
||||||
|
while not (index & 1):
|
||||||
|
depth += 1
|
||||||
|
index = index >> 1
|
||||||
|
|
||||||
|
return depth
|
||||||
|
|
||||||
|
def parent(self, index: int, depth: Optional[int] = None) -> int:
|
||||||
|
"""The index of the parent relative to the given index.
|
||||||
|
|
||||||
|
:param index: The index relative to the parent
|
||||||
|
:param depth: The depth of the index
|
||||||
|
"""
|
||||||
|
if depth is None:
|
||||||
|
depth = self.depth(index)
|
||||||
|
|
||||||
|
offset = self.offset(index, depth)
|
||||||
|
|
||||||
|
return self.index(depth + 1, int((offset - (offset & 1)) / 2))
|
||||||
|
|
||||||
|
def sibling(self, index: int, depth: Optional[int] = None) -> int:
|
||||||
|
"""The index of the sibling relative to the given index.
|
||||||
|
|
||||||
|
:param index: The index relative to the sibling
|
||||||
|
:param depth: The depth of the index
|
||||||
|
"""
|
||||||
|
if depth is None:
|
||||||
|
depth = self.depth(index)
|
||||||
|
|
||||||
|
offset = self.offset(index, depth)
|
||||||
|
offset = offset - 1 if (offset & 1) else offset + 1
|
||||||
|
|
||||||
|
return self.index(depth, offset)
|
||||||
|
|
||||||
|
def children(self, index: int, depth: Optional[int] = None) -> List[int]:
|
||||||
|
"""All children relative to the given index.
|
||||||
|
|
||||||
|
:param index: The parent index
|
||||||
|
:param depth: The depth of the index
|
||||||
|
"""
|
||||||
|
if not (index & 1):
|
||||||
|
return []
|
||||||
|
|
||||||
|
if not depth:
|
||||||
|
depth = self.depth(index)
|
||||||
|
|
||||||
|
offset = self.offset(index, depth) * 2
|
||||||
|
|
||||||
|
return [
|
||||||
|
self.index((depth - 1), offset),
|
||||||
|
self.index((depth - 1), (offset + 1)),
|
||||||
|
]
|
||||||
|
|
||||||
|
def spans(self, index: int, depth: Optional[int] = None) -> List[int]:
|
||||||
|
"""The span of the tree.
|
||||||
|
|
||||||
|
:param index: The index of the root
|
||||||
|
:param depth: The depth of the index
|
||||||
|
"""
|
||||||
|
if not (index & 1):
|
||||||
|
return [index, index]
|
||||||
|
|
||||||
|
if not depth:
|
||||||
|
depth = self.depth(index)
|
||||||
|
|
||||||
|
offset = self.offset(index, depth)
|
||||||
|
width = 2 ** (depth + 1)
|
||||||
|
|
||||||
|
return [(offset * width), ((offset + 1) * width) - 2]
|
||||||
|
|
||||||
|
def left_span(self, index: int, depth: Optional[int] = None) -> int:
|
||||||
|
"""The leftmost span of the tree.
|
||||||
|
|
||||||
|
:param index: The index of the tree root
|
||||||
|
:param depth: The depth of the index
|
||||||
|
"""
|
||||||
|
if not (index & 1):
|
||||||
|
return index
|
||||||
|
|
||||||
|
if not depth:
|
||||||
|
depth = self.depth(index)
|
||||||
|
|
||||||
|
return self.offset(index, depth) * (2 ** (depth + 1))
|
||||||
|
|
||||||
|
def right_span(self, index: int, depth: Optional[int] = None) -> int:
|
||||||
|
"""The rightmost span of the tree.
|
||||||
|
|
||||||
|
:param index: The index of the tree root
|
||||||
|
:param depth: The depth of the index
|
||||||
|
"""
|
||||||
|
if not (index & 1):
|
||||||
|
return index
|
||||||
|
|
||||||
|
if not depth:
|
||||||
|
depth = self.depth(index)
|
||||||
|
|
||||||
|
return (self.offset(index, depth) + 1) * (2 ** (depth + 1)) - 2
|
||||||
|
|
||||||
|
def count(self, index: int, depth: Optional[int] = None) -> int:
|
||||||
|
"""The number of nodes a tree contains.
|
||||||
|
|
||||||
|
:param index: The index of the root of the tree
|
||||||
|
:param depth: The depth of the root of the tree
|
||||||
|
"""
|
||||||
|
if not (index & 1):
|
||||||
|
return 1
|
||||||
|
|
||||||
|
if not depth:
|
||||||
|
depth = self.depth(index)
|
||||||
|
|
||||||
|
return (2 ** (depth + 1)) - 1
|
||||||
|
|
||||||
|
def full_roots(self, index: int) -> List[int]:
|
||||||
|
"""All full roots within the tree.
|
||||||
|
|
||||||
|
:param index: The index of the root of the tree
|
||||||
|
"""
|
||||||
|
if index & 1:
|
||||||
|
message = 'Roots only available for tree depth 0'
|
||||||
|
raise ValueError(message)
|
||||||
|
|
||||||
|
roots: List[int] = []
|
||||||
|
|
||||||
|
index = int(index / 2)
|
||||||
|
offset, factor = 0, 1
|
||||||
|
|
||||||
|
while True:
|
||||||
|
if not index:
|
||||||
|
return roots
|
||||||
|
|
||||||
|
while (factor * 2) <= index:
|
||||||
|
factor = factor * 2
|
||||||
|
|
||||||
|
roots.append((offset + factor) - 1)
|
||||||
|
|
||||||
|
offset = (offset + 2) * factor
|
||||||
|
index = index - factor
|
||||||
|
factor = 1
|
||||||
|
|
||||||
|
def left_child(self, index: int, depth: Optional[int] = None) -> int:
|
||||||
|
"""The left child of the given index.
|
||||||
|
|
||||||
|
:param index: The index of the tree
|
||||||
|
:param depth: The depth of the tree
|
||||||
|
"""
|
||||||
|
if not (index & 1):
|
||||||
|
return -1
|
||||||
|
|
||||||
|
if not depth:
|
||||||
|
depth = self.depth(index)
|
||||||
|
|
||||||
|
return self.index((depth - 1), (self.offset(index, depth) * 2))
|
||||||
|
|
||||||
|
def right_child(self, index: int, depth: Optional[int] = None) -> int:
|
||||||
|
"""The right child of the given index.
|
||||||
|
|
||||||
|
:param index: The index of the tree
|
||||||
|
:param depth: The depth of the tree
|
||||||
|
"""
|
||||||
|
if not (index & 1):
|
||||||
|
return -1
|
||||||
|
|
||||||
|
if not depth:
|
||||||
|
depth = self.depth(index)
|
||||||
|
|
||||||
|
return self.index((depth - 1), (1 + (self.offset(index, depth) * 2)))
|
111
flat_tree/iterator.py
Normal file
111
flat_tree/iterator.py
Normal file
@ -0,0 +1,111 @@
|
|||||||
|
"""Stateful iterator for flat trees."""
|
||||||
|
|
||||||
|
__all__ = ['FlatTreeIterator']
|
||||||
|
|
||||||
|
import attr
|
||||||
|
|
||||||
|
from flat_tree.accessor import FlatTreeAccessor
|
||||||
|
|
||||||
|
|
||||||
|
@attr.s(auto_attribs=True)
|
||||||
|
class FlatTreeIterator:
|
||||||
|
"""Stateful iterator for flat trees."""
|
||||||
|
|
||||||
|
index: int = 0
|
||||||
|
offset: int = 0
|
||||||
|
factor: int = 0
|
||||||
|
accessor: FlatTreeAccessor = FlatTreeAccessor()
|
||||||
|
|
||||||
|
def __attrs_post_init__(self):
|
||||||
|
self.seek(self.index)
|
||||||
|
|
||||||
|
def next(self) -> int:
|
||||||
|
"""The next index in the tree."""
|
||||||
|
self.offset += 1
|
||||||
|
self.index += self.factor
|
||||||
|
return self.index
|
||||||
|
|
||||||
|
def prev(self) -> int:
|
||||||
|
"""The previous index in the tree."""
|
||||||
|
if not self.offset:
|
||||||
|
return self.index
|
||||||
|
|
||||||
|
self.offset -= 1
|
||||||
|
self.index = self.factor
|
||||||
|
|
||||||
|
return self.index
|
||||||
|
|
||||||
|
def seek(self, index: int) -> None:
|
||||||
|
"""Move iterator to the given index.
|
||||||
|
|
||||||
|
:param index: The index to move to
|
||||||
|
"""
|
||||||
|
self.index = index
|
||||||
|
|
||||||
|
if self.index & 1:
|
||||||
|
self.offset = self.accessor.offset(index)
|
||||||
|
self.factor = 2 ** (self.accessor.depth(index) + 1)
|
||||||
|
else:
|
||||||
|
self.offset = int(index / 2)
|
||||||
|
self.factor = 2
|
||||||
|
|
||||||
|
def parent(self) -> int:
|
||||||
|
"""Move iterator to the parent index."""
|
||||||
|
if self.offset & 1:
|
||||||
|
self.index -= int(self.factor / 2)
|
||||||
|
self.offset = int((self.offset - 1) / 2)
|
||||||
|
else:
|
||||||
|
self.index += int(self.factor / 2)
|
||||||
|
self.offset = int(self.offset / 2)
|
||||||
|
|
||||||
|
self.factor *= 2
|
||||||
|
|
||||||
|
return self.index
|
||||||
|
|
||||||
|
def left_child(self) -> int:
|
||||||
|
"""Move iterator to the left child."""
|
||||||
|
if self.factor == 2:
|
||||||
|
return self.index
|
||||||
|
|
||||||
|
self.factor = int(self.factor / 2)
|
||||||
|
self.index -= int(self.factor / 2)
|
||||||
|
self.offset *= 2
|
||||||
|
|
||||||
|
return self.index
|
||||||
|
|
||||||
|
def right_child(self) -> int:
|
||||||
|
"""Move iterator to the right child."""
|
||||||
|
if self.factor == 2:
|
||||||
|
return self.index
|
||||||
|
|
||||||
|
self.factor = int(self.factor / 2)
|
||||||
|
self.index += int(self.factor / 2)
|
||||||
|
self.offset = (2 * self.offset) + 1
|
||||||
|
|
||||||
|
return self.index
|
||||||
|
|
||||||
|
def left_span(self) -> int:
|
||||||
|
"""Move iterator to the left span."""
|
||||||
|
self.index = int(self.index - (self.factor / 2)) + 1
|
||||||
|
self.offset = int(self.index / 2)
|
||||||
|
self.factor = 2
|
||||||
|
return self.index
|
||||||
|
|
||||||
|
def right_span(self) -> int:
|
||||||
|
"""Move iterator to the right span."""
|
||||||
|
self.index = int((self.index - self.factor) / 2) - 1
|
||||||
|
self.offset = int(self.index / 2)
|
||||||
|
self.factor = 2
|
||||||
|
return self.index
|
||||||
|
|
||||||
|
def sibling(self) -> int:
|
||||||
|
"""Move iterator to the sibling."""
|
||||||
|
return self.next() if self.is_left() else self.prev()
|
||||||
|
|
||||||
|
def is_left(self) -> bool:
|
||||||
|
"""Is this index a left sibling?"""
|
||||||
|
return not self.offset & 1
|
||||||
|
|
||||||
|
def is_right(self) -> bool:
|
||||||
|
"""Is this index a right sibling?"""
|
||||||
|
return not self.is_left()
|
4
mypy.ini
Normal file
4
mypy.ini
Normal file
@ -0,0 +1,4 @@
|
|||||||
|
[mypy]
|
||||||
|
python_version = 3.7
|
||||||
|
platform = linux
|
||||||
|
ignore_missing_imports = True
|
54
pyproject.toml
Normal file
54
pyproject.toml
Normal file
@ -0,0 +1,54 @@
|
|||||||
|
[build-system]
|
||||||
|
requires = [
|
||||||
|
"setuptools>=40.9.0",
|
||||||
|
"setuptools-scm",
|
||||||
|
"wheel",
|
||||||
|
]
|
||||||
|
build-backend = "setuptools.build_meta"
|
||||||
|
|
||||||
|
[tool.black]
|
||||||
|
line-length = 80
|
||||||
|
target-version = ['py35', 'py36', 'py37']
|
||||||
|
skip-string-normalization = true
|
||||||
|
include = '\.pyi?$'
|
||||||
|
|
||||||
|
[tool.towncrier]
|
||||||
|
directory = "changelog/"
|
||||||
|
filename = "CHANGELOG.rst"
|
||||||
|
package = "flat_tree"
|
||||||
|
package_dir = "flat_tree"
|
||||||
|
|
||||||
|
[[tool.towncrier.type]]
|
||||||
|
directory = "removal"
|
||||||
|
name = "Removals"
|
||||||
|
showcontent = true
|
||||||
|
|
||||||
|
[[tool.towncrier.type]]
|
||||||
|
directory = "deprecation"
|
||||||
|
name = "Deprecations"
|
||||||
|
showcontent = true
|
||||||
|
|
||||||
|
[[tool.towncrier.type]]
|
||||||
|
directory = "feature"
|
||||||
|
name = "Features"
|
||||||
|
showcontent = true
|
||||||
|
|
||||||
|
[[tool.towncrier.type]]
|
||||||
|
directory = "bugfix"
|
||||||
|
name = "Bug Fixes"
|
||||||
|
showcontent = true
|
||||||
|
|
||||||
|
[[tool.towncrier.type]]
|
||||||
|
directory = "doc"
|
||||||
|
name = "Improved Documentation"
|
||||||
|
showcontent = true
|
||||||
|
|
||||||
|
[[tool.towncrier.type]]
|
||||||
|
directory = "trivial"
|
||||||
|
name = "Trivial/Internal Changes"
|
||||||
|
showcontent = true
|
||||||
|
|
||||||
|
[[tool.towncrier.type]]
|
||||||
|
directory = "announce"
|
||||||
|
name = "Project Announcements"
|
||||||
|
showcontent = true
|
64
setup.cfg
Normal file
64
setup.cfg
Normal file
@ -0,0 +1,64 @@
|
|||||||
|
[tool:pytest]
|
||||||
|
testpaths = test
|
||||||
|
|
||||||
|
[flake8]
|
||||||
|
max-line-length = 80
|
||||||
|
|
||||||
|
[isort]
|
||||||
|
known_first_party = flat_tree
|
||||||
|
known_third_party = pytest
|
||||||
|
line_length = 80
|
||||||
|
multi_line_output = 3
|
||||||
|
skip = .venv, .tox
|
||||||
|
include_trailing_comma = True
|
||||||
|
|
||||||
|
[metadata]
|
||||||
|
name = flat-tree
|
||||||
|
author = decentral1se
|
||||||
|
author_email = lukewm@riseup.net
|
||||||
|
maintainer = decentral1se
|
||||||
|
maintainer_email = lukewm@riseup.net
|
||||||
|
url = https://hack.decentral1.se/datpy/flat-tree.git
|
||||||
|
project_urls =
|
||||||
|
Source Code = https://hack.decentral1.se/datpy/flat-tree.git
|
||||||
|
Changelog = https://flat-tree.readthedocs.io/en/latest/changelog.html
|
||||||
|
Documentation = https://flat-tree.readthedocs.io/
|
||||||
|
Maintainer Support = https://decentral1.se/
|
||||||
|
description = Utilities for navigating flat trees
|
||||||
|
long_description = file: README.rst
|
||||||
|
license = MIT
|
||||||
|
license_file = LICENSE
|
||||||
|
classifiers =
|
||||||
|
Programming Language :: Python :: 3
|
||||||
|
Programming Language :: Python :: 3.5
|
||||||
|
Programming Language :: Python :: 3.6
|
||||||
|
Programming Language :: Python :: 3.7
|
||||||
|
|
||||||
|
[options]
|
||||||
|
use_scm_version = True
|
||||||
|
python_requires = !=2.7.*, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*
|
||||||
|
setup_requires =
|
||||||
|
setuptools_scm
|
||||||
|
setuptools_scm_git_archive
|
||||||
|
package_dir =
|
||||||
|
= .
|
||||||
|
packages = find:
|
||||||
|
zip_safe = False
|
||||||
|
install_requires =
|
||||||
|
attrs >= 19.1.0, < 20.0
|
||||||
|
|
||||||
|
[options.packages.find]
|
||||||
|
where = .
|
||||||
|
|
||||||
|
[build_sphinx]
|
||||||
|
all_files = 1
|
||||||
|
build-dir = documentation/build
|
||||||
|
source-dir = documentation/source
|
||||||
|
warning-is-error = True
|
||||||
|
|
||||||
|
[options.extras_require]
|
||||||
|
docs =
|
||||||
|
sphinx
|
||||||
|
sphinx-autodoc-typehints >= 1.6.0, < 2.0
|
||||||
|
changelog =
|
||||||
|
towncrier <= 19.2.0, < 20.0
|
3
setup.py
Normal file
3
setup.py
Normal file
@ -0,0 +1,3 @@
|
|||||||
|
from setuptools import setup
|
||||||
|
|
||||||
|
setup(use_scm_version=True)
|
0
test/__init__.py
Normal file
0
test/__init__.py
Normal file
15
test/conftest.py
Normal file
15
test/conftest.py
Normal file
@ -0,0 +1,15 @@
|
|||||||
|
import pytest
|
||||||
|
|
||||||
|
from flat_tree.accessor import FlatTreeAccessor
|
||||||
|
|
||||||
|
|
||||||
|
@pytest.fixture
|
||||||
|
def tree():
|
||||||
|
return FlatTreeAccessor()
|
||||||
|
|
||||||
|
|
||||||
|
@pytest.fixture
|
||||||
|
def FlatTreeIterator():
|
||||||
|
from flat_tree.iterator import FlatTreeIterator
|
||||||
|
|
||||||
|
return FlatTreeIterator
|
120
test/test_accessor.py
Normal file
120
test/test_accessor.py
Normal file
@ -0,0 +1,120 @@
|
|||||||
|
import pytest
|
||||||
|
|
||||||
|
|
||||||
|
def test_index(tree):
|
||||||
|
assert tree.index(0, 0) == 0
|
||||||
|
assert tree.index(0, 1) == 2
|
||||||
|
assert tree.index(0, 2) == 4
|
||||||
|
|
||||||
|
|
||||||
|
def test_depth(tree):
|
||||||
|
assert tree.depth(5) == 1
|
||||||
|
assert tree.depth(3) == 2
|
||||||
|
assert tree.depth(4) == 0
|
||||||
|
|
||||||
|
|
||||||
|
def test_offset(tree):
|
||||||
|
assert tree.offset(0) == 0
|
||||||
|
assert tree.offset(1) == 0
|
||||||
|
assert tree.offset(2) == 1
|
||||||
|
assert tree.offset(3) == 0
|
||||||
|
assert tree.offset(4) == 2
|
||||||
|
|
||||||
|
assert isinstance(tree.offset(0), int)
|
||||||
|
|
||||||
|
|
||||||
|
def test_parent(tree):
|
||||||
|
assert tree.index(1, 0) == 1
|
||||||
|
assert tree.index(1, 1) == 5
|
||||||
|
assert tree.index(2, 0) == 3
|
||||||
|
|
||||||
|
assert tree.parent(0) == 1
|
||||||
|
assert tree.parent(2) == 1
|
||||||
|
assert tree.parent(1) == 3
|
||||||
|
|
||||||
|
|
||||||
|
def test_sibling(tree):
|
||||||
|
assert tree.sibling(0) == 2
|
||||||
|
assert tree.sibling(2) == 0
|
||||||
|
assert tree.sibling(1) == 5
|
||||||
|
assert tree.sibling(5) == 1
|
||||||
|
|
||||||
|
|
||||||
|
def test_children(tree):
|
||||||
|
assert tree.children(0) == []
|
||||||
|
assert tree.children(1) == [0, 2]
|
||||||
|
assert tree.children(3) == [1, 5]
|
||||||
|
assert tree.children(9) == [8, 10]
|
||||||
|
|
||||||
|
|
||||||
|
def test_count(tree):
|
||||||
|
assert tree.count(0) == 1
|
||||||
|
assert tree.count(1) == 3
|
||||||
|
assert tree.count(3) == 7
|
||||||
|
assert tree.count(5) == 3
|
||||||
|
assert tree.count(23) == 15
|
||||||
|
assert tree.count(27) == 7
|
||||||
|
|
||||||
|
|
||||||
|
def test_spans(tree):
|
||||||
|
assert tree.spans(0) == [0, 0]
|
||||||
|
assert tree.spans(1) == [0, 2]
|
||||||
|
assert tree.spans(3) == [0, 6]
|
||||||
|
assert tree.spans(23) == [16, 30]
|
||||||
|
assert tree.spans(27) == [24, 30]
|
||||||
|
|
||||||
|
|
||||||
|
def test_left_span(tree):
|
||||||
|
assert tree.left_span(0) == 0
|
||||||
|
assert tree.left_span(1) == 0
|
||||||
|
assert tree.left_span(3) == 0
|
||||||
|
assert tree.left_span(23) == 16
|
||||||
|
assert tree.left_span(27) == 24
|
||||||
|
|
||||||
|
|
||||||
|
def test_right_span(tree):
|
||||||
|
assert tree.right_span(0) == 0
|
||||||
|
assert tree.right_span(1) == 2
|
||||||
|
assert tree.right_span(3) == 6
|
||||||
|
assert tree.right_span(23) == 30
|
||||||
|
assert tree.right_span(27) == 30
|
||||||
|
|
||||||
|
|
||||||
|
def test_full_roots(tree):
|
||||||
|
assert tree.full_roots(0) == []
|
||||||
|
assert tree.full_roots(2) == [0]
|
||||||
|
assert tree.full_roots(8) == [3]
|
||||||
|
assert tree.full_roots(20) == [7, 17]
|
||||||
|
assert tree.full_roots(18) == [7, 16]
|
||||||
|
assert tree.full_roots(16) == [7]
|
||||||
|
|
||||||
|
with pytest.raises(ValueError):
|
||||||
|
tree.full_roots(1)
|
||||||
|
|
||||||
|
|
||||||
|
def test_left_child(tree):
|
||||||
|
assert tree.left_child(0) == -1
|
||||||
|
assert tree.left_child(1) == 0
|
||||||
|
assert tree.left_child(3) == 1
|
||||||
|
|
||||||
|
|
||||||
|
def test_right_child(tree):
|
||||||
|
assert tree.right_child(0) == -1
|
||||||
|
assert tree.right_child(1) == 2
|
||||||
|
assert tree.right_child(3) == 5
|
||||||
|
|
||||||
|
|
||||||
|
def test_parent_big_index(tree):
|
||||||
|
assert tree.parent(10000000000) == 10000000001
|
||||||
|
|
||||||
|
|
||||||
|
def test_child_parent_child(tree):
|
||||||
|
child = 0
|
||||||
|
|
||||||
|
for _ in range(50):
|
||||||
|
child = tree.parent(child)
|
||||||
|
assert child == 1125899906842623
|
||||||
|
|
||||||
|
for _ in range(50):
|
||||||
|
child = tree.left_child(child)
|
||||||
|
assert child == 0
|
23
test/test_iterator.py
Normal file
23
test/test_iterator.py
Normal file
@ -0,0 +1,23 @@
|
|||||||
|
def test_iter_from_leaf(FlatTreeIterator):
|
||||||
|
tree_iter = FlatTreeIterator()
|
||||||
|
|
||||||
|
assert tree_iter.index == 0
|
||||||
|
assert tree_iter.parent() == 1
|
||||||
|
assert tree_iter.parent() == 3
|
||||||
|
assert tree_iter.parent() == 7
|
||||||
|
assert tree_iter.right_child() == 11
|
||||||
|
assert tree_iter.left_child() == 9
|
||||||
|
assert tree_iter.next() == 13
|
||||||
|
assert tree_iter.left_span() == 12
|
||||||
|
|
||||||
|
|
||||||
|
def test_iter_not_from_leaf(FlatTreeIterator):
|
||||||
|
tree_iter = FlatTreeIterator(index=1)
|
||||||
|
|
||||||
|
assert tree_iter.index == 1
|
||||||
|
assert tree_iter.parent() == 3
|
||||||
|
assert tree_iter.parent() == 7
|
||||||
|
assert tree_iter.right_child() == 11
|
||||||
|
assert tree_iter.left_child() == 9
|
||||||
|
assert tree_iter.next() == 13
|
||||||
|
assert tree_iter.left_span() == 12
|
9
test/test_version.py
Normal file
9
test/test_version.py
Normal file
@ -0,0 +1,9 @@
|
|||||||
|
"""Version test module."""
|
||||||
|
|
||||||
|
|
||||||
|
def test_version_fails_gracefully(mocker):
|
||||||
|
target = 'pkg_resources.get_distribution'
|
||||||
|
with mocker.patch(target, side_effect=Exception()):
|
||||||
|
from flat_tree.__init__ import __version__
|
||||||
|
|
||||||
|
assert __version__ == 'unknown'
|
86
tox.ini
Normal file
86
tox.ini
Normal file
@ -0,0 +1,86 @@
|
|||||||
|
[tox]
|
||||||
|
envlist =
|
||||||
|
{py36,py37}-test
|
||||||
|
lint
|
||||||
|
sort
|
||||||
|
format
|
||||||
|
type
|
||||||
|
docs
|
||||||
|
changelog
|
||||||
|
metadata-release
|
||||||
|
skip_missing_interpreters = True
|
||||||
|
isolated_build = True
|
||||||
|
|
||||||
|
[testenv]
|
||||||
|
description = run the unit tests
|
||||||
|
deps =
|
||||||
|
pytest
|
||||||
|
pytest-cov
|
||||||
|
pytest-mock
|
||||||
|
commands =
|
||||||
|
pytest test/ --cov={toxinidir}/flat_tree/ --no-cov-on-fail {posargs}
|
||||||
|
|
||||||
|
[testenv:lint]
|
||||||
|
description = lint the source
|
||||||
|
skipdist = True
|
||||||
|
deps =
|
||||||
|
flake8
|
||||||
|
commands =
|
||||||
|
flake8 {posargs} flat_tree/ test/
|
||||||
|
|
||||||
|
[testenv:sort]
|
||||||
|
description = sort the source
|
||||||
|
skipdist = True
|
||||||
|
deps =
|
||||||
|
isort
|
||||||
|
commands =
|
||||||
|
isort {posargs:-rc -c} -sp setup.cfg flat_tree/ test/
|
||||||
|
|
||||||
|
[testenv:format]
|
||||||
|
description = format the source
|
||||||
|
skipdist = True
|
||||||
|
basepython = python3.6
|
||||||
|
deps =
|
||||||
|
black
|
||||||
|
commands =
|
||||||
|
black {posargs:--check} flat_tree/ test/
|
||||||
|
|
||||||
|
[testenv:type]
|
||||||
|
description = type check the source
|
||||||
|
basepython = python3.7
|
||||||
|
skipdist = True
|
||||||
|
deps =
|
||||||
|
mypy
|
||||||
|
commands =
|
||||||
|
mypy flat_tree/ test/
|
||||||
|
|
||||||
|
[testenv:docs]
|
||||||
|
description = build the documentation
|
||||||
|
deps =
|
||||||
|
sphinx
|
||||||
|
sphinx-autodoc-typehints >= 1.6.0, < 2.0
|
||||||
|
commands =
|
||||||
|
python -m setup build_sphinx
|
||||||
|
|
||||||
|
[testenv:changelog]
|
||||||
|
description = draft the changelog
|
||||||
|
skipdist = True
|
||||||
|
deps =
|
||||||
|
towncrier
|
||||||
|
commands =
|
||||||
|
towncrier --draft
|
||||||
|
|
||||||
|
[testenv:metadata-release]
|
||||||
|
description = validate the package metadata
|
||||||
|
deps =
|
||||||
|
twine
|
||||||
|
commands =
|
||||||
|
twine check .tox/dist/*
|
||||||
|
|
||||||
|
[testenv:release]
|
||||||
|
description = make a release
|
||||||
|
deps =
|
||||||
|
{[testenv:metadata-release]deps}
|
||||||
|
commands =
|
||||||
|
python -m setup sdist bdist_wheel
|
||||||
|
twine upload {toxworkdir}/dist/*
|
Loading…
Reference in New Issue
Block a user